Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM43-4BH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1506264 bp
Thymine Count
1483148 bp
Guanine Count
1054015 bp
Cytosine Count
1111250 bp
Genome Length
5155765 bp
Protein-coding Genes
4166 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DW935_20960 | Not Available | Positive | 4855683 - 4856351 | 24733.0 |
| hypothetical protein | DW935_20965 | Not Available | Positive | 4857471 - 4857826 | 13295.3 |
| rna polymerase sigma-70 factor | DW935_20970 | Not Available | Negative | 4858700 - 4859248 | 22036.5 |
| fecr family protein | DW935_20975 | Not Available | Positive | 4859770 - 4860486 | 27497.2 |
| tonb-dependent receptor | DW935_20980 | Not Available | Positive | 4860525 - 4863926 | 126159.0 |
| ragb/susd family nutrient uptake outer membrane protein | DW935_20985 | Not Available | Positive | 4863939 - 4865852 | 73437.9 |
| duf1735 domain-containing protein | DW935_20990 | Not Available | Positive | 4865889 - 4867241 | 50619.8 |
| carbohydrate-binding protein | DW935_20995 | Not Available | Positive | 4867341 - 4870250 | 110202.0 |
| gfo/idh/moca family oxidoreductase | DW935_21000 | Not Available | Positive | 4870382 - 4872028 | 62117.1 |
| type iv secretory system conjugative dna transfer family protein | DW935_21010 | Not Available | Positive | 4873987 - 4874775 | 29584.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

