Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM43-4BH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1506264 bp
Thymine Count
1483148 bp
Guanine Count
1054015 bp
Cytosine Count
1111250 bp
Genome Length
5155765 bp
Protein-coding Genes
4166 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DW935_20905 | Not Available | Negative | 4839225 - 4839665 | 17033.7 |
| hypothetical protein | DW935_20910 | Not Available | Positive | 4840080 - 4840400 | 11721.3 |
| type iv secretory system conjugative dna transfer family protein | DW935_20915 | Not Available | Positive | 4840468 - 4840773 | 11594.5 |
| recombinase | DW935_20920 | Not Available | Negative | 4841152 - 4842333 | 45990.3 |
| tonb-dependent receptor | DW935_20925 | Not Available | Positive | 4842684 - 4845866 | 118473.0 |
| ragb/susd family nutrient uptake outer membrane protein | DW935_20930 | Not Available | Positive | 4845885 - 4847861 | 74933.2 |
| susc/raga family tonb-linked outer membrane protein | DW935_20935 | Not Available | Positive | 4847902 - 4850751 | 106679.0 |
| ragb/susd family nutrient uptake outer membrane protein | DW935_20940 | Not Available | Positive | 4850780 - 4852477 | 64090.1 |
| hypothetical protein | DW935_20945 | Not Available | Positive | 4852564 - 4853358 | 30395.8 |
| duf1565 domain-containing protein | DW935_20955 | Not Available | Positive | 4854133 - 4855686 | 57189.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

