Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM43-4BH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1506264 bp
Thymine Count
1483148 bp
Guanine Count
1054015 bp
Cytosine Count
1111250 bp
Genome Length
5155765 bp
Protein-coding Genes
4166 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 5-methyltetrahydrofolate--homocysteine methyltransferase | DW935_20560 | Not Available | Negative | 4757498 - 4758385 | 33419.9 |
| dihydroorotase | DW935_20565 | Not Available | Negative | 4758382 - 4759722 | 49602.5 |
| polyprenol monophosphomannose synthase | DW935_20570 | Not Available | Negative | 4759719 - 4760468 | 28446.6 |
| porin family protein | DW935_20575 | Not Available | Negative | 4760621 - 4761247 | 23463.7 |
| duf4136 domain-containing protein | DW935_20580 | Not Available | Negative | 4761289 - 4761927 | 24032.2 |
| copper homeostasis protein | DW935_20585 | Not Available | Negative | 4762051 - 4762539 | 17145.3 |
| peptidase s41 | DW935_20590 | Not Available | Negative | 4762696 - 4764093 | 52241.7 |
| bifunctional aspartate transaminase/aspartate 4-decarboxylase | DW935_20595 | Not Available | Negative | 4764242 - 4765882 | 62642.3 |
| aspartate-alanine antiporter | DW935_20600 | Not Available | Negative | 4765902 - 4767602 | 61040.4 |
| hypothetical protein | DW935_20605 | Not Available | Positive | 4767728 - 4768549 | 31599.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

