Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM43-4BH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1506264 bp
Thymine Count
1483148 bp
Guanine Count
1054015 bp
Cytosine Count
1111250 bp
Genome Length
5155765 bp
Protein-coding Genes
4166 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| trna pseudouridine(55) synthase trub | DW935_20460 | Not Available | Negative | 4734494 - 4735201 | 26653.3 |
| undecaprenyl-diphosphatase | DW935_20465 | Not Available | Negative | 4735206 - 4736006 | 28480.0 |
| duf3098 domain-containing protein | DW935_20470 | Not Available | Negative | 4736044 - 4736289 | 9145.44 |
| abc transporter permease | DW935_20475 | Not Available | Negative | 4736302 - 4737171 | 32622.6 |
| class i sam-dependent methyltransferase | DW935_20480 | Not Available | Negative | 4737174 - 4738040 | 33271.9 |
| pspc domain-containing protein | DW935_20485 | Not Available | Positive | 4738208 - 4738444 | 9155.18 |
| fkbp-type peptidyl-prolyl cis-trans isomerase | DW935_20490 | Not Available | Negative | 4738454 - 4738855 | 15118.3 |
| trna (n6-isopentenyl adenosine(37)-c2)-methylthiotransferase miab | DW935_20495 | Not Available | Negative | 4738855 - 4740225 | 51936.9 |
| hypothetical protein | DW935_20500 | Not Available | Positive | 4740563 - 4740913 | 13516.5 |
| acetyl-coa hydrolase/transferase family protein | DW935_20505 | Not Available | Positive | 4740951 - 4742444 | 54010.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

