Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM43-4BH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1506264 bp
Thymine Count
1483148 bp
Guanine Count
1054015 bp
Cytosine Count
1111250 bp
Genome Length
5155765 bp
Protein-coding Genes
4166 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DW935_20055 | Not Available | Positive | 4656413 - 4656595 | 6822.32 |
| hypothetical protein | DW935_20060 | Not Available | Positive | 4656686 - 4657123 | 16611.3 |
| type ii toxin-antitoxin system hica family toxin | DW935_20065 | Not Available | Positive | 4657270 - 4657455 | 7177.73 |
| type ii toxin-antitoxin system hicb family antitoxin | DW935_20070 | Not Available | Positive | 4657512 - 4657916 | 15505.4 |
| hypothetical protein | DW935_20075 | Not Available | Negative | 4658046 - 4658474 | 16719.2 |
| hypothetical protein | DW935_20225 | Not Available | Positive | 4677974 - 4678390 | 15556.4 |
| tonb-dependent receptor | DW935_20230 | Not Available | Positive | 4678553 - 4680007 | 56265.1 |
| duf4249 domain-containing protein | DW935_20235 | Not Available | Positive | 4680014 - 4681000 | 38261.2 |
| rna polymerase sigma-70 factor | DW935_20240 | Not Available | Positive | 4681053 - 4681679 | 24869.6 |
| hypothetical protein | DW935_20245 | Not Available | Positive | 4681735 - 4682142 | 15515.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

