Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM43-4BH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1506264 bp
Thymine Count
1483148 bp
Guanine Count
1054015 bp
Cytosine Count
1111250 bp
Genome Length
5155765 bp
Protein-coding Genes
4166 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| aaa family atpase | DW935_01660 | Not Available | Negative | 365149 - 366876 | 68009.9 |
| l-aspartate oxidase | DW935_01665 | Not Available | Negative | 367126 - 368706 | 58967.6 |
| orf6n domain-containing protein | DW935_01670 | Not Available | Positive | 368862 - 369422 | 21549.0 |
| hypothetical protein | DW935_01675 | Not Available | Positive | 369498 - 369908 | 15494.5 |
| hypothetical protein | DW935_01680 | Not Available | Positive | 369912 - 370325 | 15688.4 |
| dihydrolipoyl dehydrogenase | DW935_01685 | Not Available | Positive | 370341 - 371681 | 47674.8 |
| d-alanyl-d-alanine carboxypeptidase/d-alanyl-d-alanine-endopeptidase | DW935_01690 | Not Available | Positive | 371681 - 373081 | 52306.5 |
| 5-dehydro-4-deoxy-d-glucuronate isomerase | DW935_01695 | Not Available | Positive | 373252 - 374094 | 31850.9 |
| gluconate 5-dehydrogenase | DW935_01700 | Not Available | Positive | 374131 - 374934 | 28590.5 |
| duf4861 domain-containing protein | DW935_01705 | Not Available | Positive | 375031 - 376203 | 42906.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

