Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM43-4BH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1506264 bp
Thymine Count
1483148 bp
Guanine Count
1054015 bp
Cytosine Count
1111250 bp
Genome Length
5155765 bp
Protein-coding Genes
4166 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycoside hydrolase family 88 protein | DW935_19940 | Not Available | Negative | 4619674 - 4620795 | 43052.3 |
| ragb/susd family nutrient uptake outer membrane protein | DW935_19945 | Not Available | Negative | 4620889 - 4622829 | 74861.8 |
| susc/raga family tonb-linked outer membrane protein | DW935_19950 | Not Available | Negative | 4622841 - 4626389 | 133404.0 |
| duf4974 domain-containing protein | DW935_19955 | Not Available | Negative | 4626544 - 4627488 | 35899.4 |
| rna polymerase sigma-70 factor | DW935_19960 | Not Available | Negative | 4627607 - 4628170 | 21959.4 |
| hypothetical protein | DW935_19970 | Not Available | Positive | 4629323 - 4629514 | 7652.25 |
| aaa family atpase | DW935_19980 | Not Available | Positive | 4630041 - 4631591 | 60739.3 |
| hypothetical protein | DW935_19985 | Not Available | Negative | 4631729 - 4635028 | 124861.0 |
| rhamnogalacturonan acetylesterase | DW935_19990 | Not Available | Negative | 4635050 - 4636606 | 57980.5 |
| rhamnogalacturonan lyase | DW935_19995 | Not Available | Negative | 4636841 - 4638667 | 66972.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

