Phocaeicola vulgatus strain AM43-4BH

Gram-positiveRodNon-motileAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Bacteroidaceae

Genus

Phocaeicola

Description

Phocaeicola vulgatus strain AM43-4BH is a Gram-positive, anaerobic bacterium characterized by its rod shape and absence of mobility. This strain is classified as mesophilic, indicating it thrives at moderate temperatures. It is notable for having a single replicon and two membranes, which are typical features of certain bacterial cell structures. The natural habitat of Phocaeicola vulgatus strain AM43-4BH is host-associated, specifically found within Homo sapiens. This suggests its role as a free-living organism within the human microbiome, contributing to the complex microbial community that resides in the human body. The presence of flagella indicates potential for motility under specific conditions, although the strain itself is non-motile. Understanding the characteristics of Phocaeicola vulgatus can provide insights into its ecological role in human health. As an anaerobic bacterium, it may participate in various metabolic processes within the gut environment, influencing nutrient absorption and immune responses. Its association with humans highlights its potential significance in maintaining gut health and the broader implications for human microbiota research. Overall, Phocaeicola vulgatus strain AM43-4BH exemplifies the diversity of bacteria that inhabit the human body and their contributions to health and disease dynamics.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBacteroidaceae
GenusPhocaeicola
SpeciesPhocaeicola vulgatus
Strainstrain AM43-4BH

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Phocaeicola vulgatus strain AM43-4BH
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens
Cell arrangementSingles
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Phocaeicola vulgatus strain AM43-4BH AM43-4BH.Scaf115, whole

Gene Summary

Adenine Count

1506264 bp

Thymine Count

1483148 bp

Guanine Count

1054015 bp

Cytosine Count

1111250 bp

Genome Length

5155765 bp

Protein-coding Genes

4166 genes

Non-Coding Genes

121 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
atp-dependent helicaseDW935_19570Not AvailablePositive4532802 - 4535978122633.0
pd-(d/e)xk nuclease family proteinDW935_19575Not AvailablePositive4535978 - 4538857110988.0
4-(cytidine 5'-diphospho)-2-c-methyl-d-erythritol kinaseDW935_19580Not AvailableNegative4538932 - 453975930753.2
replicative dna helicaseDW935_19585Not AvailablePositive4540021 - 454157757459.0
phenylalanine--trna ligase subunit betaDW935_19590Not AvailablePositive4541731 - 454419391165.9
yebc/pmpr family dna-binding regulatory proteinDW935_19595Not AvailablePositive4544227 - 454496727848.7
tigr03905 family tscpd domain-containing proteinDW935_19600Not AvailablePositive4544969 - 45452149080.04
hypothetical proteinDW935_19605Not AvailableNegative4545330 - 454574215385.7
fimbrillin family proteinDW935_19615Not AvailableNegative4547442 - 454800620077.6
hypothetical proteinDW935_19620Not AvailablePositive4548142 - 454851614698.8

Displaying genes 3801 – 3810 of 4287 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.