Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM43-4BH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1506264 bp
Thymine Count
1483148 bp
Guanine Count
1054015 bp
Cytosine Count
1111250 bp
Genome Length
5155765 bp
Protein-coding Genes
4166 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| atp-dependent helicase | DW935_19570 | Not Available | Positive | 4532802 - 4535978 | 122633.0 |
| pd-(d/e)xk nuclease family protein | DW935_19575 | Not Available | Positive | 4535978 - 4538857 | 110988.0 |
| 4-(cytidine 5'-diphospho)-2-c-methyl-d-erythritol kinase | DW935_19580 | Not Available | Negative | 4538932 - 4539759 | 30753.2 |
| replicative dna helicase | DW935_19585 | Not Available | Positive | 4540021 - 4541577 | 57459.0 |
| phenylalanine--trna ligase subunit beta | DW935_19590 | Not Available | Positive | 4541731 - 4544193 | 91165.9 |
| yebc/pmpr family dna-binding regulatory protein | DW935_19595 | Not Available | Positive | 4544227 - 4544967 | 27848.7 |
| tigr03905 family tscpd domain-containing protein | DW935_19600 | Not Available | Positive | 4544969 - 4545214 | 9080.04 |
| hypothetical protein | DW935_19605 | Not Available | Negative | 4545330 - 4545742 | 15385.7 |
| fimbrillin family protein | DW935_19615 | Not Available | Negative | 4547442 - 4548006 | 20077.6 |
| hypothetical protein | DW935_19620 | Not Available | Positive | 4548142 - 4548516 | 14698.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

