Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM43-4BH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1506264 bp
Thymine Count
1483148 bp
Guanine Count
1054015 bp
Cytosine Count
1111250 bp
Genome Length
5155765 bp
Protein-coding Genes
4166 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycoside hydrolase family 97 protein | DW935_01610 | Not Available | Positive | 343176 - 345899 | 103285.0 |
| glycoside hydrolase | DW935_01615 | Not Available | Positive | 345936 - 348338 | 90021.0 |
| glycoside hydrolase family 127 protein | DW935_01620 | Not Available | Positive | 348409 - 350814 | 89576.9 |
| s9 family peptidase | DW935_01625 | Not Available | Positive | 350826 - 353069 | 85720.9 |
| tonb-dependent receptor | DW935_01630 | Not Available | Positive | 353599 - 356934 | 122693.0 |
| ragb/susd family nutrient uptake outer membrane protein | DW935_01635 | Not Available | Positive | 356947 - 358986 | 76726.5 |
| hypothetical protein | DW935_01640 | Not Available | Positive | 359006 - 361318 | 86427.1 |
| hypothetical protein | DW935_01645 | Not Available | Negative | 361349 - 361603 | 10260.6 |
| pectate lyase | DW935_01650 | Not Available | Positive | 361587 - 363728 | 81684.3 |
| duf1593 domain-containing protein | DW935_01655 | Not Available | Positive | 363745 - 365100 | 51321.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

