Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM43-4BH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1506264 bp
Thymine Count
1483148 bp
Guanine Count
1054015 bp
Cytosine Count
1111250 bp
Genome Length
5155765 bp
Protein-coding Genes
4166 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DW935_01555 | Not Available | Positive | 323615 - 323833 | 7867.05 |
| hybrid sensor histidine kinase/response regulator | DW935_01560 | Not Available | Negative | 323915 - 328201 | 162839.0 |
| l-rhamnose mutarotase | DW935_01565 | Not Available | Negative | 328282 - 328596 | 12242.6 |
| glycoside hydrolase family 88 protein | DW935_01570 | Not Available | Negative | 328634 - 330049 | 53275.8 |
| rhamnogalacturonan lyase | DW935_01575 | Not Available | Negative | 330062 - 331969 | 70719.5 |
| glycoside hydrolase family 28 protein | DW935_01580 | Not Available | Negative | 331966 - 333354 | 52063.7 |
| hypothetical protein | DW935_01585 | Not Available | Negative | 333418 - 335769 | 89453.0 |
| tonb-dependent receptor | DW935_01595 | Not Available | Positive | 336907 - 339700 | 104674.0 |
| ragb/susd family nutrient uptake outer membrane protein | DW935_01600 | Not Available | Positive | 339721 - 341388 | 63403.9 |
| duf4859 domain-containing protein | DW935_01605 | Not Available | Positive | 341855 - 342865 | 36399.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

