Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM43-4BH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1506264 bp
Thymine Count
1483148 bp
Guanine Count
1054015 bp
Cytosine Count
1111250 bp
Genome Length
5155765 bp
Protein-coding Genes
4166 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cobyric acid synthase | DW935_18935 | Not Available | Negative | 4403240 - 4404730 | 55366.6 |
| cob(i)yrinic acid a,c-diamide adenosyltransferase | DW935_18940 | Not Available | Negative | 4404730 - 4405305 | 22231.8 |
| cobyrinate a,c-diamide synthase | DW935_18945 | Not Available | Negative | 4405302 - 4406630 | 49093.6 |
| putative transporter | DW935_18950 | Not Available | Positive | 4406866 - 4408554 | 60780.7 |
| tonb-dependent receptor | DW935_18955 | Not Available | Positive | 4408947 - 4411124 | 81174.6 |
| tonb-dependent receptor | DW935_18960 | Not Available | Positive | 4411497 - 4413557 | 78366.5 |
| heme-binding protein | DW935_18965 | Not Available | Positive | 4413591 - 4414787 | 45142.5 |
| anaerobic ribonucleoside-triphosphate reductase activating protein | DW935_18970 | Not Available | Negative | 4414837 - 4415304 | 17754.3 |
| anaerobic ribonucleoside-triphosphate reductase | DW935_18975 | Not Available | Negative | 4415288 - 4417381 | 80525.2 |
| hypothetical protein | DW935_18980 | Not Available | Positive | 4418093 - 4418344 | 9673.73 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

