Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM43-4BH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1506264 bp
Thymine Count
1483148 bp
Guanine Count
1054015 bp
Cytosine Count
1111250 bp
Genome Length
5155765 bp
Protein-coding Genes
4166 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| pyridoxal phosphate-dependent aminotransferase | DW935_18575 | Not Available | Negative | 4340810 - 4341985 | 44742.1 |
| protease | DW935_18580 | Not Available | Negative | 4342054 - 4342584 | 18952.9 |
| transcriptional regulator | DW935_18585 | Not Available | Positive | 4342774 - 4343130 | 13384.4 |
| prephenate dehydratase | DW935_18590 | Not Available | Positive | 4343388 - 4344230 | 31728.1 |
| aminotransferase class i/ii-fold pyridoxal phosphate-dependent enzyme | DW935_18595 | Not Available | Positive | 4344205 - 4345389 | 45066.2 |
| 3-deoxy-7-phosphoheptulonate synthase | DW935_18600 | Not Available | Positive | 4345409 - 4346476 | 39929.6 |
| prephenate dehydrogenase/arogenate dehydrogenase family protein | DW935_18605 | Not Available | Positive | 4346481 - 4347254 | 29390.4 |
| hypothetical protein | DW935_18610 | Not Available | Negative | 4347293 - 4347473 | 6585.86 |
| hypothetical protein | DW935_18615 | Not Available | Negative | 4347608 - 4348258 | 25470.6 |
| hypothetical protein | DW935_18620 | Not Available | Negative | 4348356 - 4348706 | 13497.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

