Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM43-4BH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1506264 bp
Thymine Count
1483148 bp
Guanine Count
1054015 bp
Cytosine Count
1111250 bp
Genome Length
5155765 bp
Protein-coding Genes
4166 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Trna-met | Not Available | Not Available | Positive | 312606 - 312682 | Not Available |
| hypothetical protein | DW935_01510 | Not Available | Positive | 312886 - 313272 | 15254.1 |
| yjgp/yjgq family permease | DW935_01515 | Not Available | Positive | 313356 - 315254 | 72557.6 |
| bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/gtp cyclohydrolase ii | DW935_01520 | Not Available | Positive | 315257 - 316471 | 44949.4 |
| pyridoxal phosphate-dependent aminotransferase | DW935_01525 | Not Available | Positive | 316596 - 317789 | 43067.4 |
| 4fe-4s dicluster domain-containing protein | DW935_01530 | Not Available | Negative | 317967 - 318134 | 5717.65 |
| beta-n-acetylglucosaminidase | DW935_01535 | Not Available | Negative | 318252 - 321230 | 111455.0 |
| bifunctional metallophosphatase/5'-nucleotidase | DW935_01540 | Not Available | Negative | 321276 - 322118 | 31272.2 |
| 5'-nucleotidase | DW935_01545 | Not Available | Negative | 322130 - 322909 | 27882.5 |
| 50s ribosomal protein l19 | DW935_01550 | Not Available | Positive | 323107 - 323460 | 13130.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

