Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM43-4BH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1506264 bp
Thymine Count
1483148 bp
Guanine Count
1054015 bp
Cytosine Count
1111250 bp
Genome Length
5155765 bp
Protein-coding Genes
4166 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| clc family h(+)/cl(-) exchange transporter | DW935_17810 | Not Available | Negative | 4194701 - 4196299 | 59693.1 |
| marr family transcriptional regulator | DW935_17815 | Not Available | Negative | 4196332 - 4196661 | 12226.9 |
| pyridine nucleotide-disulfide oxidoreductase | DW935_17820 | Not Available | Negative | 4196695 - 4199196 | 90744.7 |
| mate family efflux transporter | DW935_17825 | Not Available | Positive | 4199433 - 4200788 | 49655.3 |
| slc13 family permease | DW935_17830 | Not Available | Negative | 4200751 - 4202613 | 67164.1 |
| hotdog fold thioesterase | DW935_17835 | Not Available | Positive | 4202802 - 4203209 | 14546.4 |
| isochorismate synthase | DW935_17840 | Not Available | Positive | 4203206 - 4204348 | 43184.4 |
| 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase | DW935_17845 | Not Available | Positive | 4204375 - 4206048 | 62975.0 |
| 1,4-dihydroxy-2-naphthoyl-coa synthase | DW935_17850 | Not Available | Positive | 4206048 - 4206869 | 30339.4 |
| o-succinylbenzoate synthase | DW935_17855 | Not Available | Positive | 4206947 - 4208002 | 39848.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

