Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM43-4BH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1506264 bp
Thymine Count
1483148 bp
Guanine Count
1054015 bp
Cytosine Count
1111250 bp
Genome Length
5155765 bp
Protein-coding Genes
4166 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rna polymerase sigma-70 factor | DW935_17755 | Not Available | Positive | 4175519 - 4176106 | 22777.2 |
| fecr family protein | DW935_17760 | Not Available | Positive | 4176195 - 4177205 | 38679.5 |
| susc/raga family tonb-linked outer membrane protein | DW935_17765 | Not Available | Positive | 4177270 - 4180797 | 131487.0 |
| ragb/susd family nutrient uptake outer membrane protein | DW935_17770 | Not Available | Positive | 4180819 - 4182741 | 73144.0 |
| sulfatase | DW935_17775 | Not Available | Positive | 4182836 - 4184257 | 53009.9 |
| arylsulfatase | DW935_17780 | Not Available | Positive | 4184368 - 4185894 | 57773.4 |
| alpha-l-fucosidase | DW935_17790 | Not Available | Positive | 4187480 - 4188964 | 57612.4 |
| tonb-dependent receptor | DW935_17795 | Not Available | Positive | 4189013 - 4192285 | 120778.0 |
| susd family outer membrane lipoprotein nanu | DW935_17800 | Not Available | Positive | 4192315 - 4193889 | 59992.8 |
| diacylglucosamine hydrolase | DW935_17805 | Not Available | Negative | 4194101 - 4194691 | 22791.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

