Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM43-4BH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1506264 bp
Thymine Count
1483148 bp
Guanine Count
1054015 bp
Cytosine Count
1111250 bp
Genome Length
5155765 bp
Protein-coding Genes
4166 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| helix-hairpin-helix domain-containing protein | DW935_17705 | Not Available | Negative | 4158954 - 4161026 | 81258.1 |
| duf4294 domain-containing protein | DW935_17710 | Not Available | Positive | 4161123 - 4161695 | 22062.0 |
| trmh family rna methyltransferase | DW935_17715 | Not Available | Negative | 4161726 - 4162262 | 19963.2 |
| tonb-dependent receptor | DW935_17720 | Not Available | Positive | 4162985 - 4165303 | 88604.0 |
| quinolinate synthase nada | DW935_17725 | Not Available | Positive | 4165406 - 4166398 | 36608.0 |
| non-canonical purine ntp diphosphatase | DW935_17730 | Not Available | Negative | 4166653 - 4167234 | 21352.7 |
| n-acetyltransferase | DW935_17735 | Not Available | Positive | 4167393 - 4167920 | 20715.6 |
| yitt family protein | DW935_17740 | Not Available | Negative | 4168009 - 4168905 | 33215.4 |
| leucine--trna ligase | DW935_17745 | Not Available | Negative | 4168987 - 4171821 | 108337.0 |
| protease | DW935_17750 | Not Available | Negative | 4172116 - 4175340 | 120716.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

