Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM43-4BH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1506264 bp
Thymine Count
1483148 bp
Guanine Count
1054015 bp
Cytosine Count
1111250 bp
Genome Length
5155765 bp
Protein-coding Genes
4166 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| marc family protein | DW935_17605 | Not Available | Negative | 4129980 - 4130582 | 22140.0 |
| crp/fnr family transcriptional regulator | DW935_17610 | Not Available | Positive | 4130771 - 4131448 | 26004.6 |
| m3 family peptidase | DW935_17615 | Not Available | Positive | 4131606 - 4133648 | 77781.2 |
| duf4847 domain-containing protein | DW935_17620 | Not Available | Positive | 4133662 - 4134156 | 18544.7 |
| cmp deaminase | DW935_17625 | Not Available | Positive | 4134161 - 4134595 | 16211.4 |
| s41 family peptidase | DW935_17630 | Not Available | Positive | 4134610 - 4136358 | 64897.7 |
| 5-formyltetrahydrofolate cyclo-ligase | DW935_17635 | Not Available | Positive | 4136282 - 4136812 | 20467.5 |
| glycoside hydrolase family 127 protein | DW935_17640 | Not Available | Negative | 4136848 - 4139123 | 85209.9 |
| invertase | DW935_17645 | Not Available | Positive | 4139501 - 4140112 | 23063.3 |
| hypothetical protein | DW935_17650 | Not Available | Negative | 4140958 - 4141539 | 22369.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

