Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM43-4BH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1506264 bp
Thymine Count
1483148 bp
Guanine Count
1054015 bp
Cytosine Count
1111250 bp
Genome Length
5155765 bp
Protein-coding Genes
4166 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rlua family pseudouridine synthase | DW935_17355 | Not Available | Positive | 4065093 - 4066166 | 40774.7 |
| d-alanine--d-alanine ligase | DW935_17360 | Not Available | Positive | 4066163 - 4067137 | 36067.1 |
| acyltransferase | DW935_17365 | Not Available | Positive | 4067166 - 4068323 | 44510.6 |
| hypothetical protein | DW935_17370 | Not Available | Positive | 4068382 - 4069032 | 24878.8 |
| rhodanese-like domain-containing protein | DW935_17375 | Not Available | Positive | 4069062 - 4069460 | 15066.1 |
| acetylornithine carbamoyltransferase | DW935_17380 | Not Available | Negative | 4069849 - 4070814 | 36461.8 |
| gamma-glutamyl-phosphate reductase | DW935_17385 | Not Available | Negative | 4070834 - 4072087 | 45494.7 |
| glutamate 5-kinase | DW935_17390 | Not Available | Negative | 4072125 - 4073207 | 39536.0 |
| cof-type had-iib family hydrolase | DW935_17395 | Not Available | Positive | 4073366 - 4074148 | 28795.5 |
| glycoside hydrolase family 92 protein | DW935_17400 | Not Available | Positive | 4074352 - 4076544 | 82062.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

