Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM43-4BH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1506264 bp
Thymine Count
1483148 bp
Guanine Count
1054015 bp
Cytosine Count
1111250 bp
Genome Length
5155765 bp
Protein-coding Genes
4166 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycoside hydrolase family 127 protein | DW935_01405 | Not Available | Negative | 272644 - 274566 | 73131.0 |
| glycoside hydrolase | DW935_01410 | Not Available | Negative | 274693 - 276078 | 52268.6 |
| hypothetical protein | DW935_01415 | Not Available | Negative | 276174 - 277787 | 61028.7 |
| hypothetical protein | DW935_01420 | Not Available | Negative | 277964 - 278896 | 35759.7 |
| endo-polygalacturonase | DW935_01425 | Not Available | Negative | 279087 - 280523 | 53741.4 |
| ragb/susd family nutrient uptake outer membrane protein | DW935_01430 | Not Available | Negative | 280723 - 282750 | 75440.1 |
| tonb-dependent receptor | DW935_01435 | Not Available | Negative | 282773 - 286099 | 122473.0 |
| sigma-70 family rna polymerase sigma factor | DW935_01440 | Not Available | Negative | 286143 - 286658 | 20705.7 |
| helix-turn-helix domain-containing protein | DW935_01445 | Not Available | Negative | 286859 - 289672 | 106654.0 |
| six-hairpin glycosidase | DW935_01450 | Not Available | Negative | 289831 - 292569 | 102960.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

