Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM43-4BH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1506264 bp
Thymine Count
1483148 bp
Guanine Count
1054015 bp
Cytosine Count
1111250 bp
Genome Length
5155765 bp
Protein-coding Genes
4166 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf4981 domain-containing protein | DW935_17300 | Not Available | Negative | 4044315 - 4047374 | 116606.0 |
| beta-hexosaminidase | DW935_17305 | Not Available | Negative | 4047383 - 4049698 | 87314.9 |
| duf4976 domain-containing protein | DW935_17310 | Not Available | Negative | 4049716 - 4051299 | 61699.0 |
| ragb/susd family nutrient uptake outer membrane protein | DW935_17320 | Not Available | Negative | 4051505 - 4053340 | 68507.3 |
| tonb-dependent receptor | DW935_17325 | Not Available | Negative | 4053370 - 4056591 | 116983.0 |
| xylanase | DW935_17330 | Not Available | Positive | 4056873 - 4058258 | 50982.3 |
| hybrid sensor histidine kinase/response regulator | DW935_17335 | Not Available | Positive | 4058394 - 4062326 | 149301.0 |
| rna-binding protein | DW935_17340 | Not Available | Positive | 4062592 - 4062837 | 9144.0 |
| threonine/serine exporter family protein | DW935_17345 | Not Available | Negative | 4062937 - 4064283 | 50176.2 |
| pasta domain-containing protein | DW935_17350 | Not Available | Positive | 4064433 - 4065074 | 23471.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

