Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM43-4BH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1506264 bp
Thymine Count
1483148 bp
Guanine Count
1054015 bp
Cytosine Count
1111250 bp
Genome Length
5155765 bp
Protein-coding Genes
4166 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| polysaccharide lyase | DW935_17135 | Not Available | Negative | 3992240 - 3993922 | 61325.8 |
| duf3826 domain-containing protein | DW935_17140 | Not Available | Negative | 3994122 - 3994790 | 25071.4 |
| polysaccharide lyase | DW935_17145 | Not Available | Negative | 3994815 - 3996548 | 64377.8 |
| ragb/susd family nutrient uptake outer membrane protein | DW935_17150 | Not Available | Negative | 3996717 - 3998726 | 75993.3 |
| tonb-dependent receptor | DW935_17155 | Not Available | Negative | 3998747 - 4002202 | 126230.0 |
| sugar phosphate isomerase/epimerase | DW935_17160 | Not Available | Negative | 4002232 - 4003116 | 33290.8 |
| response regulator | DW935_17165 | Not Available | Negative | 4003282 - 4007685 | 168927.0 |
| glycoside hydrolase family 2 | DW935_17170 | Not Available | Negative | 4007811 - 4010435 | 98315.5 |
| abi family protein | DW935_17180 | Not Available | Positive | 4011698 - 4012654 | 37369.1 |
| rna-binding transcriptional accessory protein | DW935_17190 | Not Available | Positive | 4014290 - 4016419 | 79543.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

