Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM43-4BH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1506264 bp
Thymine Count
1483148 bp
Guanine Count
1054015 bp
Cytosine Count
1111250 bp
Genome Length
5155765 bp
Protein-coding Genes
4166 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dmt family transporter | DW935_16970 | Not Available | Negative | 3957046 - 3957933 | 31789.8 |
| aminotransferase class i/ii-fold pyridoxal phosphate-dependent enzyme | DW935_16975 | Not Available | Negative | 3958021 - 3959208 | 44190.9 |
| diacylglycerol kinase family lipid kinase | DW935_16980 | Not Available | Positive | 3959453 - 3960487 | 38141.2 |
| trna (adenosine(37)-n6)-methyltransferase trmm | DW935_16985 | Not Available | Negative | 3960568 - 3961272 | 26207.4 |
| endopeptidase la | DW935_16990 | Not Available | Positive | 3961454 - 3963931 | 92665.5 |
| trna guanosine(34) transglycosylase tgt | DW935_16995 | Not Available | Positive | 3963934 - 3965064 | 42665.6 |
| yjgp/yjgq family permease | DW935_17000 | Not Available | Positive | 3965075 - 3966247 | 45473.9 |
| had family phosphatase | DW935_17005 | Not Available | Negative | 3966248 - 3966868 | 23389.8 |
| hypothetical protein | DW935_17010 | Not Available | Negative | 3967027 - 3967521 | 18386.1 |
| phosphoserine phosphatase serb | DW935_17015 | Not Available | Positive | 3967794 - 3969026 | 46069.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

