Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM43-4BH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1506264 bp
Thymine Count
1483148 bp
Guanine Count
1054015 bp
Cytosine Count
1111250 bp
Genome Length
5155765 bp
Protein-coding Genes
4166 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| trk system potassium transporter trka | DW935_16750 | Not Available | Negative | 3899957 - 3901297 | 49307.5 |
| 1-deoxy-d-xylulose-5-phosphate synthase | DW935_16755 | Not Available | Negative | 3901310 - 3903208 | 70238.9 |
| gscfa domain protein | DW935_16760 | Not Available | Positive | 3903301 - 3904287 | 38613.4 |
| bifunctional udp-n-acetylmuramoyl-tripeptide:d-alanyl-d-alanine ligase/alanine racemase | DW935_16765 | Not Available | Positive | 3904263 - 3906728 | 92888.1 |
| duf4858 domain-containing protein | DW935_16770 | Not Available | Positive | 3906818 - 3907381 | 21541.2 |
| exopolygalacturonase | DW935_16775 | Not Available | Negative | 3907533 - 3908837 | 49114.7 |
| beta-galactosidase | DW935_16780 | Not Available | Negative | 3908879 - 3911767 | 108855.0 |
| glycoside hydrolase family 28 protein | DW935_16785 | Not Available | Negative | 3912044 - 3913828 | 66077.4 |
| duf229 domain-containing protein | DW935_16795 | Not Available | Negative | 3914940 - 3916337 | 53462.7 |
| ragb/susd family nutrient uptake outer membrane protein | DW935_16800 | Not Available | Negative | 3916378 - 3918180 | 69788.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

