Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM43-4BH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1506264 bp
Thymine Count
1483148 bp
Guanine Count
1054015 bp
Cytosine Count
1111250 bp
Genome Length
5155765 bp
Protein-coding Genes
4166 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ppx/gppa family phosphatase | DW935_16635 | Not Available | Negative | 3868347 - 3869261 | 34342.0 |
| rna degradosome polyphosphate kinase | DW935_16640 | Not Available | Negative | 3869263 - 3871329 | 79791.8 |
| beta-xylosidase | DW935_16650 | Not Available | Negative | 3872054 - 3874921 | 108282.0 |
| ragb/susd family nutrient uptake outer membrane protein | DW935_16655 | Not Available | Negative | 3874938 - 3876656 | 64244.0 |
| response regulator | DW935_16665 | Not Available | Positive | 3880012 - 3884484 | 171741.0 |
| glycoside hydrolase family 28 protein | DW935_16670 | Not Available | Negative | 3884562 - 3885968 | 52362.6 |
| atp-binding protein | DW935_16680 | Not Available | Positive | 3886403 - 3886645 | 8923.97 |
| glucuronyl hydrolase | DW935_16685 | Not Available | Negative | 3886647 - 3887873 | 46630.1 |
| nadh-quinone oxidoreductase subunit n | DW935_16690 | Not Available | Negative | 3888049 - 3889470 | 52268.5 |
| nadh-quinone oxidoreductase subunit m | DW935_16695 | Not Available | Negative | 3889502 - 3890983 | 53794.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

