Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM43-4BH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1506264 bp
Thymine Count
1483148 bp
Guanine Count
1054015 bp
Cytosine Count
1111250 bp
Genome Length
5155765 bp
Protein-coding Genes
4166 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| trna (adenosine(37)-n6)-dimethylallyltransferase miaa | DW935_01305 | Not Available | Positive | 241172 - 242074 | 35088.3 |
| alpha-l-fucosidase | DW935_01310 | Not Available | Positive | 242083 - 244122 | 76768.4 |
| hypothetical protein | DW935_01315 | Not Available | Negative | 244300 - 245073 | 29871.5 |
| right-handed parallel beta-helix repeat-containing protein | DW935_01320 | Not Available | Negative | 245329 - 247113 | 66746.6 |
| glycosyl hydrolase family 109 protein 4 | DW935_01325 | Not Available | Negative | 247468 - 249018 | 57409.6 |
| hypothetical protein | DW935_01330 | Not Available | Positive | 249046 - 249249 | 7967.9 |
| ragb/susd family nutrient uptake outer membrane protein | DW935_01335 | Not Available | Negative | 249246 - 251057 | 69404.4 |
| susc/raga family tonb-linked outer membrane protein | DW935_01340 | Not Available | Negative | 251075 - 254476 | 126087.0 |
| duf4974 domain-containing protein | DW935_01345 | Not Available | Negative | 254605 - 255579 | 37331.8 |
| rna polymerase sigma-70 factor | DW935_01350 | Not Available | Negative | 255708 - 256253 | 21708.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

