Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM43-4BH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1506264 bp
Thymine Count
1483148 bp
Guanine Count
1054015 bp
Cytosine Count
1111250 bp
Genome Length
5155765 bp
Protein-coding Genes
4166 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| beta-glucuronidase | DW935_16075 | Not Available | Positive | 3747461 - 3750328 | 110089.0 |
| rhamnogalacturonan acetylesterase | DW935_16080 | Not Available | Positive | 3750347 - 3751621 | 47762.3 |
| glycoside hydrolase family 28 protein | DW935_16085 | Not Available | Positive | 3751639 - 3753123 | 54948.4 |
| duf4450 domain-containing protein | DW935_16090 | Not Available | Positive | 3753101 - 3753799 | 25996.3 |
| hypothetical protein | DW935_16095 | Not Available | Positive | 3753796 - 3754599 | 30936.2 |
| glycoside hydrolase family 28 protein | DW935_16100 | Not Available | Positive | 3754615 - 3756039 | 52145.9 |
| glycosyl hydrolase family 2 | DW935_16105 | Not Available | Positive | 3756056 - 3758818 | 104073.0 |
| hypothetical protein | DW935_16110 | Not Available | Negative | 3759173 - 3759295 | 4281.98 |
| isoaspartyl peptidase/l-asparaginase | DW935_16115 | Not Available | Negative | 3759770 - 3760756 | 34958.3 |
| l-rhamnose mutarotase | DW935_16120 | Not Available | Negative | 3761465 - 3761854 | 15271.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

