Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM43-4BH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1506264 bp
Thymine Count
1483148 bp
Guanine Count
1054015 bp
Cytosine Count
1111250 bp
Genome Length
5155765 bp
Protein-coding Genes
4166 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| na(+)-translocating nadh-quinone reductase subunit c | DW935_16010 | Not Available | Negative | 3728762 - 3729436 | 24676.3 |
| nadh:ubiquinone reductase (na(+)-transporting) subunit b | DW935_16015 | Not Available | Negative | 3729450 - 3730658 | 43554.0 |
| na(+)-translocating nadh-quinone reductase subunit a | DW935_16020 | Not Available | Negative | 3730687 - 3732036 | 49524.8 |
| hypothetical protein | DW935_16030 | Not Available | Positive | 3733612 - 3733815 | 7631.28 |
| susc/raga family tonb-linked outer membrane protein | DW935_16040 | Not Available | Positive | 3735230 - 3737998 | 102207.0 |
| ragb/susd family nutrient uptake outer membrane protein | DW935_16045 | Not Available | Positive | 3738028 - 3740124 | 78458.8 |
| duf3791 domain-containing protein | DW935_16050 | Not Available | Negative | 3740241 - 3740450 | 8236.12 |
| glycoside hydrolase family 88 protein | DW935_16060 | Not Available | Positive | 3741550 - 3742683 | 43972.1 |
| beta-galactosidase | DW935_16065 | Not Available | Negative | 3742802 - 3744916 | 81018.3 |
| glycoside hydrolase | DW935_16070 | Not Available | Negative | 3744895 - 3747249 | 89269.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

