Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM43-4BH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1506264 bp
Thymine Count
1483148 bp
Guanine Count
1054015 bp
Cytosine Count
1111250 bp
Genome Length
5155765 bp
Protein-coding Genes
4166 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| anaerobic ribonucleoside triphosphate reductase | DW935_15205 | Not Available | Positive | 3551649 - 3553925 | 86287.2 |
| anaerobic ribonucleoside-triphosphate reductase activating protein | DW935_15210 | Not Available | Positive | 3553931 - 3554389 | 17410.7 |
| rip metalloprotease rsep | DW935_15215 | Not Available | Negative | 3554964 - 3556307 | 50887.1 |
| 1-deoxy-d-xylulose-5-phosphate reductoisomerase | DW935_15220 | Not Available | Negative | 3556364 - 3557512 | 42392.3 |
| m23 family peptidase | DW935_15225 | Not Available | Negative | 3557520 - 3558377 | 32093.4 |
| 16s rrna processing protein rimm | DW935_15230 | Not Available | Negative | 3558396 - 3558914 | 19831.7 |
| udp-n-acetylglucosamine 1-carboxyvinyltransferase | DW935_15235 | Not Available | Negative | 3558926 - 3560230 | 47616.1 |
| duf4290 domain-containing protein | DW935_15240 | Not Available | Negative | 3560249 - 3560875 | 24903.9 |
| trna (adenosine(37)-n6)-threonylcarbamoyltransferase complex dimerization subunit type 1 tsab | DW935_15245 | Not Available | Negative | 3560922 - 3561611 | 25285.7 |
| yicc family protein | DW935_15250 | Not Available | Positive | 3561707 - 3562582 | 33867.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

