Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM43-4BH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1506264 bp
Thymine Count
1483148 bp
Guanine Count
1054015 bp
Cytosine Count
1111250 bp
Genome Length
5155765 bp
Protein-coding Genes
4166 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hydrophobe/amphiphile efflux-1 family rnd transporter | DW935_15105 | Not Available | Negative | 3525343 - 3528558 | 117341.0 |
| efflux rnd transporter periplasmic adaptor subunit | DW935_15110 | Not Available | Negative | 3528567 - 3529682 | 40160.4 |
| arac family transcriptional regulator | DW935_15115 | Not Available | Positive | 3529830 - 3530660 | 32263.9 |
| class ii fructose-1,6-bisphosphate aldolase | DW935_15120 | Not Available | Negative | 3530831 - 3531835 | 36460.6 |
| 50s ribosomal protein l31 type b | DW935_15125 | Not Available | Positive | 3532167 - 3532421 | 9656.59 |
| duf3256 family protein | DW935_15130 | Not Available | Negative | 3532506 - 3533153 | 24349.6 |
| phenylacetate--coa ligase | DW935_15135 | Not Available | Positive | 3533267 - 3534565 | 49327.6 |
| amino acid-binding protein | DW935_15140 | Not Available | Positive | 3534577 - 3535005 | 15643.0 |
| response regulator | DW935_15145 | Not Available | Negative | 3535048 - 3537774 | 103065.0 |
| carbohydrate kinase | DW935_15150 | Not Available | Negative | 3537970 - 3538857 | 32432.2 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

