Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM43-4BH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1506264 bp
Thymine Count
1483148 bp
Guanine Count
1054015 bp
Cytosine Count
1111250 bp
Genome Length
5155765 bp
Protein-coding Genes
4166 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| peptidoglycan editing factor pgef | DW935_15055 | Not Available | Negative | 3514418 - 3515200 | 28811.3 |
| gtpase obge | DW935_15060 | Not Available | Negative | 3515197 - 3516381 | 44166.2 |
| adenylate kinase | DW935_15065 | Not Available | Negative | 3516497 - 3517066 | 20885.2 |
| hypoxanthine phosphoribosyltransferase | DW935_15070 | Not Available | Negative | 3517107 - 3517643 | 20164.6 |
| bifunctional adp-dependent nad(p)h-hydrate dehydratase/nad(p)h-hydrate epimerase | DW935_15075 | Not Available | Positive | 3517763 - 3519298 | 56235.6 |
| duf4831 family protein | DW935_15080 | Not Available | Positive | 3519335 - 3520384 | 38658.6 |
| mfs transporter | DW935_15085 | Not Available | Negative | 3520466 - 3521854 | 51163.3 |
| duf3332 domain-containing protein | DW935_15090 | Not Available | Positive | 3522028 - 3522579 | 19885.5 |
| duf4934 domain-containing protein | DW935_15095 | Not Available | Positive | 3522660 - 3523892 | 46069.8 |
| tolc family protein | DW935_15100 | Not Available | Negative | 3523973 - 3525346 | 50273.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

