Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM43-4BH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1506264 bp
Thymine Count
1483148 bp
Guanine Count
1054015 bp
Cytosine Count
1111250 bp
Genome Length
5155765 bp
Protein-coding Genes
4166 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| zinc ribbon domain-containing protein | DW935_14840 | Not Available | Negative | 3449263 - 3450225 | 36830.2 |
| collagenase-like protease | DW935_14845 | Not Available | Negative | 3450212 - 3452041 | 69827.9 |
| homoserine o-succinyltransferase | DW935_14850 | Not Available | Negative | 3452038 - 3452955 | 35746.9 |
| alpha-l-fucosidase | DW935_14855 | Not Available | Negative | 3453052 - 3454503 | 56240.5 |
| beta-galactosidase | DW935_14860 | Not Available | Negative | 3454549 - 3456678 | 81123.0 |
| glycoside hydrolase family 88 protein | DW935_14865 | Not Available | Negative | 3456698 - 3457831 | 43260.8 |
| hybrid sensor histidine kinase/response regulator | DW935_14870 | Not Available | Negative | 3457921 - 3461958 | 155221.0 |
| carbohydrate-binding protein | DW935_14875 | Not Available | Negative | 3462085 - 3463251 | 42505.0 |
| ragb/susd family nutrient uptake outer membrane protein | DW935_14880 | Not Available | Negative | 3463274 - 3465259 | 76121.1 |
| tonb-dependent receptor | DW935_14885 | Not Available | Negative | 3465281 - 3468544 | 121889.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

