Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM43-4BH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1506264 bp
Thymine Count
1483148 bp
Guanine Count
1054015 bp
Cytosine Count
1111250 bp
Genome Length
5155765 bp
Protein-coding Genes
4166 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tonb-dependent receptor | DW935_14735 | Not Available | Negative | 3417505 - 3420735 | 118672.0 |
| pectin esterase | DW935_14740 | Not Available | Negative | 3420953 - 3421903 | 35857.5 |
| glycoside hydrolase family 88 protein | DW935_14745 | Not Available | Negative | 3421918 - 3423147 | 47082.1 |
| pts sugar transporter subunit iic | DW935_14750 | Not Available | Positive | 3423437 - 3424828 | 50004.1 |
| 5-dehydro-4-deoxy-d-glucuronate isomerase | DW935_14755 | Not Available | Positive | 3424847 - 3425803 | 35966.2 |
| mfs transporter | DW935_14760 | Not Available | Positive | 3426023 - 3427498 | 54295.1 |
| alpha/beta hydrolase | DW935_14765 | Not Available | Negative | 3427850 - 3428821 | 34820.5 |
| tonb-dependent receptor | DW935_14770 | Not Available | Positive | 3429376 - 3431397 | 76043.9 |
| hypothetical protein | DW935_14775 | Not Available | Positive | 3431431 - 3432519 | 41380.2 |
| abc transporter substrate-binding protein | DW935_14780 | Not Available | Positive | 3432523 - 3433659 | 42160.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

