Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM43-4BH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1506264 bp
Thymine Count
1483148 bp
Guanine Count
1054015 bp
Cytosine Count
1111250 bp
Genome Length
5155765 bp
Protein-coding Genes
4166 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hsp20/alpha crystallin family protein | DW935_14470 | Not Available | Negative | 3341412 - 3341849 | 16949.0 |
| zn-dependent alcohol dehydrogenase | DW935_14475 | Not Available | Positive | 3342178 - 3343224 | 38491.5 |
| rna methyltransferase | DW935_14480 | Not Available | Positive | 3343260 - 3344066 | 29055.5 |
| tonb-dependent receptor | DW935_14490 | Not Available | Positive | 3345045 - 3347837 | 103984.0 |
| ragb/susd family nutrient uptake outer membrane protein | DW935_14495 | Not Available | Positive | 3347866 - 3349341 | 54862.1 |
| noncanonical pyrimidine nucleotidase, yjjg family | DW935_14500 | Not Available | Negative | 3349492 - 3350181 | 26926.8 |
| hypothetical protein | DW935_14505 | Not Available | Negative | 3350257 - 3351105 | 31533.4 |
| 16s rrna (cytidine(1402)-2'-o)-methyltransferase | DW935_14510 | Not Available | Negative | 3351134 - 3351808 | 24857.2 |
| thymidine kinase | DW935_14515 | Not Available | Positive | 3352013 - 3352612 | 22372.9 |
| ai-2e family transporter | DW935_14520 | Not Available | Positive | 3352623 - 3353759 | 42756.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

