Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM43-4BH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1506264 bp
Thymine Count
1483148 bp
Guanine Count
1054015 bp
Cytosine Count
1111250 bp
Genome Length
5155765 bp
Protein-coding Genes
4166 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tlpa family protein disulfide reductase | DW935_13520 | Not Available | Positive | 3137333 - 3138532 | 46058.0 |
| uronate isomerase | DW935_13525 | Not Available | Negative | 3138621 - 3140027 | 54309.7 |
| tagaturonate reductase | DW935_13530 | Not Available | Positive | 3140353 - 3141792 | 53835.0 |
| hypothetical protein | DW935_13535 | Not Available | Positive | 3141894 - 3142307 | 15741.7 |
| precorrin-2 c(20)-methyltransferase | DW935_13540 | Not Available | Negative | 3142270 - 3142998 | 27466.2 |
| iron abc transporter substrate-binding protein | DW935_13545 | Not Available | Positive | 3143102 - 3144253 | 43216.9 |
| iron abc transporter permease | DW935_13550 | Not Available | Positive | 3144265 - 3145302 | 36757.8 |
| abc transporter atp-binding protein | DW935_13555 | Not Available | Positive | 3145305 - 3146324 | 37541.6 |
| cobalt-precorrin-5b (c(1))-methyltransferase | DW935_13560 | Not Available | Negative | 3146346 - 3148142 | 66008.1 |
| precorrin-4 c(11)-methyltransferase | DW935_13565 | Not Available | Negative | 3148168 - 3149979 | 67020.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

