Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM43-4BH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1506264 bp
Thymine Count
1483148 bp
Guanine Count
1054015 bp
Cytosine Count
1111250 bp
Genome Length
5155765 bp
Protein-coding Genes
4166 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| altronate dehydratase | DW935_13415 | Not Available | Negative | 3116705 - 3118195 | 54186.1 |
| laci family dna-binding transcriptional regulator | DW935_13420 | Not Available | Negative | 3118217 - 3119290 | 41131.5 |
| sugar kinase | DW935_13425 | Not Available | Positive | 3119534 - 3120556 | 37020.8 |
| bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase | DW935_13430 | Not Available | Positive | 3120666 - 3121340 | 23919.2 |
| peptidase | DW935_13435 | Not Available | Positive | 3121594 - 3122412 | 29692.7 |
| arac family transcriptional regulator | DW935_13440 | Not Available | Positive | 3122912 - 3123745 | 32094.1 |
| isoleucine--trna ligase | DW935_13445 | Not Available | Positive | 3123954 - 3127442 | 132080.0 |
| trar/dksa family transcriptional regulator | DW935_13450 | Not Available | Positive | 3127466 - 3127846 | 14347.1 |
| lipoprotein signal peptidase | DW935_13455 | Not Available | Positive | 3127956 - 3128594 | 24149.8 |
| duf4296 domain-containing protein | DW935_13460 | Not Available | Positive | 3128598 - 3129572 | 37267.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

