Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM43-4BH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1506264 bp
Thymine Count
1483148 bp
Guanine Count
1054015 bp
Cytosine Count
1111250 bp
Genome Length
5155765 bp
Protein-coding Genes
4166 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| excinuclease abc subunit uvra | DW935_13350 | Not Available | Positive | 3103888 - 3106716 | 105933.0 |
| cys-trna(pro) deacylase | DW935_13355 | Not Available | Positive | 3106731 - 3107216 | 17802.8 |
| mfs transporter | DW935_13360 | Not Available | Positive | 3107323 - 3108984 | 59851.2 |
| lysine exporter lyso family protein | DW935_13365 | Not Available | Negative | 3109047 - 3109667 | 22330.3 |
| duf340 domain-containing protein | DW935_13370 | Not Available | Negative | 3109664 - 3109942 | 10143.0 |
| dna mismatch endonuclease vsr | DW935_13385 | Not Available | Positive | 3110871 - 3111386 | 20459.9 |
| restriction endonuclease | DW935_13390 | Not Available | Negative | 3111388 - 3112578 | 46051.6 |
| dna (cytosine-5-)-methyltransferase | DW935_13395 | Not Available | Negative | 3112584 - 3113879 | 49367.9 |
| duf4373 domain-containing protein | DW935_13405 | Not Available | Positive | 3114227 - 3115078 | 32922.3 |
| na+/h+ antiporter nhac family protein | DW935_13410 | Not Available | Negative | 3115255 - 3116559 | 46607.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

