Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM43-4BH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1506264 bp
Thymine Count
1483148 bp
Guanine Count
1054015 bp
Cytosine Count
1111250 bp
Genome Length
5155765 bp
Protein-coding Genes
4166 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| patatin | DW935_13300 | Not Available | Negative | 3092156 - 3094366 | 81953.5 |
| exonuclease | DW935_13305 | Not Available | Positive | 3094574 - 3095062 | 18589.9 |
| yigz family protein | DW935_13310 | Not Available | Positive | 3095096 - 3095698 | 22823.7 |
| porin | DW935_13315 | Not Available | Positive | 3095889 - 3096902 | 38665.0 |
| excinuclease abc subunit uvrb | DW935_13320 | Not Available | Negative | 3097069 - 3099102 | 77715.7 |
| outer membrane protein assembly factor bamd | DW935_13325 | Not Available | Positive | 3099268 - 3100104 | 32450.3 |
| rna polymerase rpb6 | DW935_13330 | Not Available | Positive | 3100121 - 3100456 | 12965.3 |
| duf4293 family protein | DW935_13335 | Not Available | Positive | 3100706 - 3101158 | 16883.5 |
| port family protein | DW935_13340 | Not Available | Negative | 3101242 - 3101925 | 25699.9 |
| lysm peptidoglycan-binding domain-containing protein | DW935_13345 | Not Available | Negative | 3101925 - 3103733 | 68546.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

