Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM43-4BH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1506264 bp
Thymine Count
1483148 bp
Guanine Count
1054015 bp
Cytosine Count
1111250 bp
Genome Length
5155765 bp
Protein-coding Genes
4166 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf3078 domain-containing protein | DW935_13140 | Not Available | Negative | 3052995 - 3054389 | 53456.6 |
| ctp synthase | DW935_13145 | Not Available | Positive | 3054599 - 3056197 | 60081.3 |
| membrane protein insertase yidc | DW935_13150 | Not Available | Positive | 3056237 - 3058102 | 70945.9 |
| s9 family peptidase | DW935_13160 | Not Available | Positive | 3058329 - 3060449 | 79823.9 |
| rlua family pseudouridine synthase | DW935_13165 | Not Available | Negative | 3061568 - 3062494 | 35642.1 |
| 23s rrna (uracil(1939)-c(5))-methyltransferase rlmd | DW935_13170 | Not Available | Negative | 3062539 - 3063960 | 54029.3 |
| pyruvate, phosphate dikinase | DW935_13175 | Not Available | Positive | 3064159 - 3066885 | 100098.0 |
| hypothetical protein | DW935_13185 | Not Available | Positive | 3069152 - 3069589 | 17453.3 |
| abc transporter permease | DW935_13190 | Not Available | Negative | 3069650 - 3071962 | 87528.2 |
| abc transporter atp-binding protein | DW935_13195 | Not Available | Negative | 3071982 - 3072656 | 24853.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

