Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM43-4BH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1506264 bp
Thymine Count
1483148 bp
Guanine Count
1054015 bp
Cytosine Count
1111250 bp
Genome Length
5155765 bp
Protein-coding Genes
4166 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| port family protein | DW935_13090 | Not Available | Positive | 3042092 - 3042811 | 27400.6 |
| serine hydroxymethyltransferase | DW935_13095 | Not Available | Positive | 3043058 - 3044338 | 46829.6 |
| mate family efflux transporter | DW935_13100 | Not Available | Positive | 3044537 - 3045880 | 49290.3 |
| ompa family protein | DW935_13105 | Not Available | Positive | 3045929 - 3046648 | 24484.1 |
| monofunctional biosynthetic peptidoglycan transglycosylase | DW935_13110 | Not Available | Positive | 3046777 - 3047499 | 27910.3 |
| duf1460 domain-containing protein | DW935_13115 | Not Available | Negative | 3047471 - 3048355 | 33269.5 |
| biotin/lipoyl-binding protein | DW935_13120 | Not Available | Negative | 3048481 - 3050256 | 66738.8 |
| rna polymerase sigma factor | DW935_13125 | Not Available | Negative | 3050446 - 3050949 | 19667.6 |
| trimeric intracellular cation channel family protein | DW935_13130 | Not Available | Negative | 3051108 - 3051722 | 22186.8 |
| udp-n-acetyl glucosamine 2-epimerase | DW935_13135 | Not Available | Positive | 3051806 - 3052894 | 40202.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

