Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM43-4BH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1506264 bp
Thymine Count
1483148 bp
Guanine Count
1054015 bp
Cytosine Count
1111250 bp
Genome Length
5155765 bp
Protein-coding Genes
4166 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| yhch/yjgk/yial family protein | DW935_12990 | Not Available | Negative | 3021993 - 3022433 | 16248.5 |
| duf2461 domain-containing protein | DW935_12995 | Not Available | Negative | 3022470 - 3023135 | 25851.7 |
| inositol monophosphatase | DW935_13000 | Not Available | Negative | 3023211 - 3023999 | 29098.5 |
| phosphatidylinositol-4-phosphate 5-kinase | DW935_13005 | Not Available | Negative | 3024007 - 3025125 | 42526.8 |
| insulinase family protein | DW935_13010 | Not Available | Negative | 3025197 - 3026483 | 48727.6 |
| 3-deoxy-manno-octulosonate cytidylyltransferase | DW935_13015 | Not Available | Negative | 3026484 - 3027242 | 28105.6 |
| 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase | DW935_13020 | Not Available | Positive | 3027321 - 3027695 | 14212.0 |
| tetr/acrr family transcriptional regulator | DW935_13025 | Not Available | Positive | 3028140 - 3028757 | 23930.1 |
| tolc family protein | DW935_13030 | Not Available | Positive | 3028754 - 3030052 | 49733.8 |
| hlyd family efflux transporter periplasmic adaptor subunit | DW935_13035 | Not Available | Positive | 3030039 - 3030935 | 33034.6 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

