Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM43-4BH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1506264 bp
Thymine Count
1483148 bp
Guanine Count
1054015 bp
Cytosine Count
1111250 bp
Genome Length
5155765 bp
Protein-coding Genes
4166 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| peroxiredoxin | DW935_12730 | Not Available | Positive | 2946711 - 2947277 | 21111.1 |
| alkyl hydroperoxide reductase subunit f | DW935_12735 | Not Available | Positive | 2947290 - 2948840 | 55958.4 |
| laci family transcriptional regulator | DW935_12740 | Not Available | Positive | 2948980 - 2950002 | 38256.6 |
| duf3823 domain-containing protein | DW935_12750 | Not Available | Negative | 2951747 - 2952421 | 24987.8 |
| ragb/susd family nutrient uptake outer membrane protein | DW935_12755 | Not Available | Negative | 2952434 - 2954284 | 71098.0 |
| tonb-dependent receptor | DW935_12760 | Not Available | Negative | 2954297 - 2957428 | 117423.0 |
| hybrid sensor histidine kinase/response regulator | DW935_12765 | Not Available | Positive | 2957624 - 2961658 | 152464.0 |
| histidine-type phosphatase | DW935_12770 | Not Available | Negative | 2961907 - 2963646 | 66793.8 |
| glycoside hydrolase family 92 protein | DW935_12775 | Not Available | Negative | 2963653 - 2965932 | 86149.9 |
| glycoside hydrolase family 28 protein | DW935_12780 | Not Available | Negative | 2965935 - 2967347 | 52116.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

