Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM43-4BH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1506264 bp
Thymine Count
1483148 bp
Guanine Count
1054015 bp
Cytosine Count
1111250 bp
Genome Length
5155765 bp
Protein-coding Genes
4166 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nadph-dependent 7-cyano-7-deazaguanine reductase quef | DW935_12495 | Not Available | Positive | 2891975 - 2892430 | 17765.2 |
| Trna-ser | Not Available | Not Available | Positive | 2892518 - 2892608 | Not Available |
| hybrid sensor histidine kinase/response regulator | DW935_12510 | Not Available | Positive | 2893717 - 2898039 | 165175.0 |
| glycoside hydrolase family 28 protein | DW935_12515 | Not Available | Positive | 2898119 - 2899510 | 52711.9 |
| alpha/beta hydrolase | DW935_12520 | Not Available | Positive | 2899515 - 2900444 | 33717.8 |
| glycoside hydrolase family 95 protein | DW935_12525 | Not Available | Positive | 2900481 - 2902949 | 92025.5 |
| sigma-54-dependent fis family transcriptional regulator | DW935_12535 | Not Available | Negative | 2905608 - 2906930 | 49707.2 |
| radical sam mobile pair protein b | DW935_12545 | Not Available | Negative | 2908285 - 2909160 | 34028.9 |
| radical sam mobile pair protein a | DW935_12550 | Not Available | Negative | 2909157 - 2909825 | 26030.2 |
| mbl fold metallo-hydrolase | DW935_12555 | Not Available | Negative | 2909822 - 2910598 | 28663.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

