Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM43-4BH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1506264 bp
Thymine Count
1483148 bp
Guanine Count
1054015 bp
Cytosine Count
1111250 bp
Genome Length
5155765 bp
Protein-coding Genes
4166 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| phenylalanine--trna ligase subunit alpha | DW935_12445 | Not Available | Negative | 2882312 - 2883346 | 38981.6 |
| duf4348 domain-containing protein | DW935_12450 | Not Available | Positive | 2883458 - 2884318 | 33536.8 |
| udp-n-acetylmuramate dehydrogenase | DW935_12455 | Not Available | Positive | 2884330 - 2885343 | 37603.1 |
| mbl fold metallo-hydrolase | DW935_12460 | Not Available | Positive | 2885352 - 2886128 | 29140.4 |
| endonuclease iii | DW935_12465 | Not Available | Negative | 2886123 - 2886767 | 24101.6 |
| amidinotransferase | DW935_12470 | Not Available | Positive | 2886885 - 2887805 | 35512.7 |
| amidinotransferase | DW935_12475 | Not Available | Positive | 2887828 - 2888739 | 34215.8 |
| ornithine--oxo-acid transaminase | DW935_12480 | Not Available | Positive | 2888754 - 2889989 | 45621.9 |
| vut family protein | DW935_12485 | Not Available | Positive | 2890278 - 2890964 | 25083.7 |
| 7-cyano-7-deazaguanine synthase quec | DW935_12490 | Not Available | Positive | 2891085 - 2891756 | 24779.8 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

