Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM43-4BH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1506264 bp
Thymine Count
1483148 bp
Guanine Count
1054015 bp
Cytosine Count
1111250 bp
Genome Length
5155765 bp
Protein-coding Genes
4166 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tonb-dependent receptor | DW935_12395 | Not Available | Positive | 2866506 - 2869505 | 112088.0 |
| ragb/susd family nutrient uptake outer membrane protein | DW935_12400 | Not Available | Positive | 2869527 - 2871116 | 61771.0 |
| glycoside hydrolase | DW935_12405 | Not Available | Positive | 2871196 - 2873829 | 101166.0 |
| 1,4-beta-xylanase | DW935_12410 | Not Available | Positive | 2873838 - 2874806 | 36989.1 |
| arabinan endo-1,5-alpha-l-arabinosidase | DW935_12415 | Not Available | Positive | 2874803 - 2875804 | 37472.1 |
| hypothetical protein | DW935_12420 | Not Available | Positive | 2875824 - 2877857 | 77627.4 |
| aminodeoxychorismate synthase component i | DW935_12425 | Not Available | Positive | 2878199 - 2879182 | 37492.0 |
| 4-amino-4-deoxychorismate lyase | DW935_12430 | Not Available | Positive | 2879166 - 2879759 | 22693.3 |
| hypothetical protein | DW935_12435 | Not Available | Positive | 2879849 - 2880991 | 43009.4 |
| mfs transporter | DW935_12440 | Not Available | Negative | 2880988 - 2882184 | 43918.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

