Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM43-4BH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1506264 bp
Thymine Count
1483148 bp
Guanine Count
1054015 bp
Cytosine Count
1111250 bp
Genome Length
5155765 bp
Protein-coding Genes
4166 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Trna-his | Not Available | Not Available | Positive | 2848876 - 2848952 | Not Available |
| sigma-70 family rna polymerase sigma factor | DW935_12350 | Not Available | Positive | 2849028 - 2849594 | 22575.3 |
| fecr family protein | DW935_12355 | Not Available | Positive | 2849667 - 2850749 | 41467.0 |
| susc/raga family tonb-linked outer membrane protein | DW935_12360 | Not Available | Positive | 2850793 - 2854323 | 132036.0 |
| ragb/susd family nutrient uptake outer membrane protein | DW935_12365 | Not Available | Positive | 2854238 - 2855818 | 60039.6 |
| tlpa family protein disulfide reductase | DW935_12370 | Not Available | Positive | 2855934 - 2857301 | 51267.4 |
| ahpc/tsa family protein | DW935_12375 | Not Available | Positive | 2857309 - 2858487 | 44862.0 |
| beta-galactosidase | DW935_12380 | Not Available | Positive | 2859104 - 2860918 | 69360.5 |
| galactose mutarotase | DW935_12385 | Not Available | Positive | 2860924 - 2862057 | 42499.2 |
| hybrid sensor histidine kinase/response regulator | DW935_12390 | Not Available | Positive | 2862240 - 2866190 | 152107.0 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

