Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM43-4BH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1506264 bp
Thymine Count
1483148 bp
Guanine Count
1054015 bp
Cytosine Count
1111250 bp
Genome Length
5155765 bp
Protein-coding Genes
4166 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DW935_11830 | Not Available | Positive | 2728568 - 2729257 | 26553.2 |
| susc/raga family tonb-linked outer membrane protein | DW935_11835 | Not Available | Positive | 2729296 - 2732442 | 115904.0 |
| susd/ragb family nutrient-binding outer membrane lipoprotein | DW935_11840 | Not Available | Positive | 2732457 - 2733941 | 55584.1 |
| metallophosphatase | DW935_11845 | Not Available | Positive | 2733967 - 2734968 | 36945.0 |
| duf2851 family protein | DW935_11850 | Not Available | Negative | 2735127 - 2736392 | 48573.2 |
| 4-hydroxy-tetrahydrodipicolinate reductase | DW935_11855 | Not Available | Positive | 2736476 - 2737231 | 27422.6 |
| s26 family signal peptidase | DW935_11860 | Not Available | Positive | 2737235 - 2738659 | 55209.5 |
| signal peptidase i | DW935_11865 | Not Available | Positive | 2738697 - 2739560 | 32796.6 |
| hypothetical protein | DW935_11870 | Not Available | Positive | 2739560 - 2740216 | 25575.3 |
| sdr family nad(p)-dependent oxidoreductase | DW935_11875 | Not Available | Positive | 2740221 - 2741033 | 28669.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

