Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM43-4BH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1506264 bp
Thymine Count
1483148 bp
Guanine Count
1054015 bp
Cytosine Count
1111250 bp
Genome Length
5155765 bp
Protein-coding Genes
4166 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| deoxyribose-phosphate aldolase | DW935_11615 | Not Available | Negative | 2680667 - 2681614 | 34798.2 |
| pyrophosphatase | DW935_11620 | Not Available | Negative | 2681621 - 2681941 | 12366.8 |
| d-tyrosyl-trna(tyr) deacylase | DW935_11625 | Not Available | Negative | 2681941 - 2682393 | 16476.0 |
| excinuclease abc subunit uvrc | DW935_11630 | Not Available | Negative | 2682551 - 2684371 | 69850.7 |
| hypothetical protein | DW935_11635 | Not Available | Positive | 2684374 - 2684598 | 8505.38 |
| adenine phosphoribosyltransferase | DW935_11640 | Not Available | Negative | 2684601 - 2685125 | 19189.4 |
| trna uridine-5-carboxymethylaminomethyl(34) synthesis enzyme mnmg | DW935_11645 | Not Available | Negative | 2685185 - 2687056 | 69589.1 |
| flotillin family protein | DW935_11650 | Not Available | Negative | 2687203 - 2688903 | 62444.3 |
| hypothetical protein | DW935_11655 | Not Available | Negative | 2688929 - 2689462 | 20260.5 |
| rrna maturation rnase ybey | DW935_11660 | Not Available | Negative | 2689689 - 2690105 | 15837.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

