Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM43-4BH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1506264 bp
Thymine Count
1483148 bp
Guanine Count
1054015 bp
Cytosine Count
1111250 bp
Genome Length
5155765 bp
Protein-coding Genes
4166 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DW935_11510 | Not Available | Positive | 2656500 - 2656700 | 7750.51 |
| duf4248 domain-containing protein | DW935_11515 | Not Available | Positive | 2658063 - 2658308 | 9147.02 |
| n-acetylmuramoyl-l-alanine amidase | DW935_11520 | Not Available | Positive | 2658361 - 2658837 | 17326.8 |
| hypothetical protein | DW935_11525 | Not Available | Positive | 2659358 - 2659756 | 14210.9 |
| hypothetical protein | DW935_11530 | Not Available | Positive | 2659781 - 2660248 | 16814.2 |
| flavin reductase family protein | DW935_11535 | Not Available | Negative | 2660860 - 2661366 | 19424.2 |
| dna mismatch repair protein muts | DW935_11540 | Not Available | Positive | 2661485 - 2664097 | 97844.5 |
| glycoside hydrolase | DW935_11545 | Not Available | Positive | 2664147 - 2666126 | 75334.0 |
| port family protein | DW935_11550 | Not Available | Positive | 2666333 - 2666920 | 21981.3 |
| hypothetical protein | DW935_11555 | Not Available | Positive | 2666963 - 2668630 | 64171.6 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

