Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM43-4BH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1506264 bp
Thymine Count
1483148 bp
Guanine Count
1054015 bp
Cytosine Count
1111250 bp
Genome Length
5155765 bp
Protein-coding Genes
4166 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| phenylacetate--coa ligase | DW935_11360 | Not Available | Negative | 2624746 - 2626047 | 48625.5 |
| pyridoxal phosphate-dependent aminotransferase | DW935_11365 | Not Available | Negative | 2626142 - 2627446 | 48672.3 |
| indolepyruvate oxidoreductase subunit beta | DW935_11370 | Not Available | Negative | 2627451 - 2628032 | 21245.8 |
| indolepyruvate ferredoxin oxidoreductase | DW935_11375 | Not Available | Negative | 2628029 - 2629645 | 58851.5 |
| amidohydrolase | DW935_11380 | Not Available | Negative | 2629669 - 2630430 | 28511.8 |
| tonb family protein | DW935_11385 | Not Available | Negative | 2630622 - 2631308 | 25600.7 |
| transcription-repair coupling factor | DW935_11390 | Not Available | Negative | 2631573 - 2634938 | 127092.0 |
| duf418 domain-containing protein | DW935_11395 | Not Available | Positive | 2635046 - 2636230 | 45032.6 |
| tetratricopeptide repeat protein | DW935_11400 | Not Available | Positive | 2636292 - 2638487 | 86640.1 |
| acyltransferase | DW935_11405 | Not Available | Negative | 2638839 - 2639981 | 43811.0 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

