Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM43-4BH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1506264 bp
Thymine Count
1483148 bp
Guanine Count
1054015 bp
Cytosine Count
1111250 bp
Genome Length
5155765 bp
Protein-coding Genes
4166 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| gfo/idh/moca family oxidoreductase | DW935_11255 | Not Available | Positive | 2598266 - 2599255 | 36847.1 |
| duf4421 domain-containing protein | DW935_11260 | Not Available | Positive | 2599265 - 2600392 | 43092.1 |
| hypothetical protein | DW935_11265 | Not Available | Negative | 2600465 - 2602036 | 58556.0 |
| hypothetical protein | DW935_11270 | Not Available | Negative | 2602080 - 2603480 | 52376.5 |
| dna-binding protein | DW935_11275 | Not Available | Negative | 2603856 - 2604479 | 23853.8 |
| helicase | DW935_11285 | Not Available | Positive | 2604884 - 2606974 | 81462.1 |
| thioredoxin | DW935_11290 | Not Available | Positive | 2607205 - 2607465 | 10400.5 |
| 50s ribosomal protein l11 methyltransferase | DW935_11295 | Not Available | Positive | 2607476 - 2608321 | 31686.8 |
| yccf domain-containing protein | DW935_11300 | Not Available | Negative | 2608542 - 2608910 | 13206.2 |
| glycoside hydrolase family 25 protein | DW935_11305 | Not Available | Negative | 2608956 - 2609822 | 33936.9 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

